Approximation Hardness of the Cross-Species Conserved Active Modules Detection Problem
Thomas Hume
,
Hayssam Soueidan
,
Macha Nikolski
,
Guillaume Blin
41st International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM'15) , Jan 2015, Pec pod Sněžkou, Czech Republic. pp. 242-253
Conference papers
hal-01056406v1
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Emergence of Atypical Mycoplasma agalactiae Strains Harboring a New Prophage and Associated with an Alpine Wild Ungulate Mortality Episode
Florence Tardy
,
Eric Baranowski
,
Laurent-Xavier Nouvel
,
Virginie Mick
,
Lucia Manso-Silvan
,
et al.
Journal articles
hal-00939842v1
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YOC, A new strategy for pairwise alignment of collinear genomes
Raluca Uricaru
,
Célia Michotey
,
Hélène Chiapello
,
Eric Rivals
Journal articles
lirmm-01170968v1
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Développement d'outils informatiques pour le traitement et l'analyse des données en RMN-1H, dans un contexte d'expériences métabolomiques
Daniel Jacob
,
Catherine C. Deborde
,
Stéphane Bernillon
,
Annick Moing
5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique , Labo/service de l'auteur, Ville service., May 2011, Paris, France
Conference papers
hal-02747402v1
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Complete Genome Sequence of Mycoplasma putrefaciens Strain 9231, One of the Agents of Contagious Agalactia in Goats
Virginie Dupuy
,
Pascal Sirand-Pugnet
,
Eric Baranowski
,
Aurélien Barré
,
Marc Breton
,
et al.
Journal articles
hal-00907450v1
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Bioinformatics methods for analyzing anti-hormonal treatment resistance in breast cancer
Justine Rudewicz
,
Hayssam Soueidan
,
Audrey Gros
,
Gaetan Macgrogan
,
Hervé Bonnefoi
,
et al.
BCBB 2014 (Bordeaux Computational Biology and Bioinformatics) , Nov 2014, Bordeaux, France
Conference poster
hal-01120049v1
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A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships
Claire Lemaitre
,
Aurélien Barré
,
Christine Citti
,
Florence Tardy
,
François Thiaucourt
,
et al.
Journal articles
hal-00784414v1
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PROTIC workshop: A bioinformatics environment for proteome data validation, analysis and integration
Renaud Flores
,
Johann J. Joets
,
Olivier Langella
,
Benoit B. Valot
,
Michel M. Zivy
,
et al.
Plant Genomics seminar 2010 , Mar 2010, Pont Royal en Provence, France
Conference papers
hal-02758409v1
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Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks
Jonathan Dubois
,
Ludovic Cottret
,
Amine Ghozlane
,
David Auber
,
Frédéric Bringaud
,
et al.
16th International Conference on Information Visualization (IV'12) , Jul 2012, Montpellier, France. pp.4771a204
Conference papers
hal-00742176v1
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Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA).
Anita Burgun
,
Dina V Oksen
,
Wolfgang Kuchinke
,
Hans-Ulrich Prokosch
,
Thomas Ganslandt
,
et al.
Journal articles
hal-01232643v1
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XEML Interactive designer
Benjamin Dartigues
,
Kenny Biliau
,
Cécile Cabasson
,
Yves Gibon
,
Joachim Kopka
,
et al.
Bordeaux Computational Biology and Bioinformatics , Nov 2014, Bordeaux, France.
, 1 p., 2014
Conference poster
hal-01203290v1
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Utilisation d'une Grille de Calcul (GRISBI) pour le Traitement de Données NGS (New Generation Sequencing)
Florence Maurier
,
Alexis Groppi
,
Aurélien Barré
,
Delphine Naquin
,
Aurélien Roult
,
et al.
Rencontres Scientifiques France Grilles 2011 , Sep 2011, Lyon, France
Conference papers
hal-00653023v1
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Tools and applications in plant metabolomics at Bordeaux Metabolome Fluxome Facility (PMFB; http://www.bordeaux.inra.fr/umr619/NMR.htm)
Catherine C. Deborde
,
Stéphane Bernillon
,
Mickael M. Maucourt
,
Cécile Cabasson
,
Benoit Biais
,
et al.
5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique , Labo/service de l'auteur, Ville service., May 2011, Paris, France
Conference papers
hal-02749839v1
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Reference-free detection of isolated SNPs
Raluca Uricaru
,
Guillaume Rizk
,
Vincent Lacroix
,
Elsa Quillery
,
Olivier Plantard
,
et al.
Journal articles
hal-01083715v1
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MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant NMR metabolomic profiles.
Hélène Ferry-Dumazet
,
Laurent Gil
,
Catherine Deborde
,
Annick Moing
,
Stéphane Bernillon
,
et al.
Journal articles
hal-00645944v1
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A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study.
Jérôme J. Durand
,
Catherine Bodénès
,
Emilie Chancerel
,
Jean-Marc Frigerio
,
Giovanni Vendramin
,
et al.
Journal articles
hal-00645935v1
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Genome-wide detection of sRNA targets with rNAV
Jonathan Dubois
,
Amine Ghozlane
,
Patricia Thebault
,
Isabelle Dutour
,
Romain Bourqui
Symposium on Biological Data Visualization , Oct 2013, Atlanta, United States. pp.81 - 88
Conference papers
hal-00935443v1
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Développement de méthodes bioinformatiques dédiées à la prédiction et l'analyse des réseaux métaboliques et des ARN non codants
Amine Ghozlane
Informatique [cs]. Université Sciences et Technologies - Bordeaux I, 2012. Français.
⟨NNT : ⟩
Theses
tel-01086134v1
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From Genomic to Functional models
Macha Nikolski
Computer Science [cs]. Université Sciences et Technologies - Bordeaux I, 2009
Habilitation à diriger des recherches
tel-01086142v1
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Visualization of time-series data in the context of metabolic networks with Systrip Software
Jonathan Dubois
,
Ludovic Cottret
,
Amine Ghozlane
,
David Auber
,
Frédéric Bringaud
,
et al.
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013) , Jul 2013, France
Conference papers
hal-00838725v1
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Mise en place d'un gestionnaire de données léger, pluridisciplinaire et national pour les données scientifiques
David Benaben
,
C. Biscarat
,
Yonny Cardenas
,
Helene Cordier
,
Pierre Gay
,
et al.
Rencontres Scientifiques des Utilisateurs de Calcul Intensif, de Cloud Et de Stockage (Journées SUCCES 2013) , Nov 2013, Paris, France
Conference papers
hal-00927505v1
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Minimum Information About a Simulation Experiment (MIASE)
Dagmar Waltemath
,
Richard Adams
,
Daniel A. Beard
,
Frank T. Bergmann
,
Upinder S. Bhalla
,
et al.
Journal articles
hal-00772491v1
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Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome
Pascal P. Sirand-Pugnet
,
Carole Lartigue Prat
,
Marc Marenda
,
Daniel Jacob
,
Aurélien Barré
,
et al.
Journal articles
hal-02663589v1
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Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity
Laurent X. Nouvel
,
Pascal Sirand-Pugnet
,
Marc S. Marenda
,
Valérie Barbe
,
Sophie Mangenot
,
et al.
Journal articles
hal-02660112v1
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Genome wide sequence-based association studies for dissection of important agronomie traits in apricot
Véronique Decroocq
,
Stéphanie Mariette
,
Fabienne Wong Jun Tai
,
Stephane Decroocq
,
David Tricon
,
et al.
Plant and Animal Genome XXII Conference , Jan 2014, San Diego, United States
Conference papers
hal-02796089v1
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Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny
Amélie Véron
,
Claire Lemaitre
,
Christian Gautier
,
Vincent Lacroix
,
Marie-France Sagot
Journal articles
hal-00784423v1
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Evolutionary History of Contagious Bovine Pleuropneumonia Using Next Generation Sequencing of Mycoplasma mycoides Subsp. mycoides "Small Colony".
Virginie Dupuy
,
Lucía Manso-Silván
,
Valérie Barbe
,
Patricia Thebault
,
Emilie Dordet-Frisoni
,
et al.
Journal articles
hal-00744892v1
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Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak.
Saneyoshi Ueno
,
Grégoire Le Provost
,
Valérie Léger
,
Christophe C. Klopp
,
Céline Noirot
,
et al.
Journal articles
hal-00645933v1
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Flux analysis of the Trypanosoma brucei glycolysis based on a multi-objective criteria bioinformatic approach, Advances in Bioinfromatics, 2012, in press. International conference with published acts
Amine Ghozlane
,
Frédéric Bringaud
,
Hayssam Soueidan
,
Isabelle Dutour
,
Fabien Jourdan
,
et al.
Journal articles
hal-00723179v1
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Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas.
Sabine Pereyre
,
Pascal Sirand-Pugnet
,
Laure Beven
,
Alain Charron
,
Hélène Renaudin
,
et al.
Journal articles
hal-00645937v1
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