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Approximation Hardness of the Cross-Species Conserved Active Modules Detection Problem

Thomas Hume , Hayssam Soueidan , Macha Nikolski , Guillaume Blin
41st International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM'15), Jan 2015, Pec pod Sněžkou, Czech Republic. pp. 242-253
Conference papers hal-01056406v1
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Emergence of Atypical Mycoplasma agalactiae Strains Harboring a New Prophage and Associated with an Alpine Wild Ungulate Mortality Episode

Florence Tardy , Eric Baranowski , Laurent-Xavier Nouvel , Virginie Mick , Lucia Manso-Silvan , et al.
Applied and Environmental Microbiology, 2012, 78 (13), pp.4659-4668. ⟨10.1128/AEM.00332-12⟩
Journal articles hal-00939842v1
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YOC, A new strategy for pairwise alignment of collinear genomes

Raluca Uricaru , Célia Michotey , Hélène Chiapello , Eric Rivals
BMC Bioinformatics, 2015, 16 (1), pp.16:111. ⟨10.1186/s12859-015-0530-3⟩
Journal articles lirmm-01170968v1
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Développement d'outils informatiques pour le traitement et l'analyse des données en RMN-1H, dans un contexte d'expériences métabolomiques

Daniel Jacob , Catherine C. Deborde , Stéphane Bernillon , Annick Moing
5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France
Conference papers hal-02747402v1
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Complete Genome Sequence of Mycoplasma putrefaciens Strain 9231, One of the Agents of Contagious Agalactia in Goats

Virginie Dupuy , Pascal Sirand-Pugnet , Eric Baranowski , Aurélien Barré , Marc Breton , et al.
Genome Announcements, 2013, 1 (3), pp.e00354-13. ⟨10.1128/genomeA.00354-13⟩
Journal articles hal-00907450v1
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Bioinformatics methods for analyzing anti-hormonal treatment resistance in breast cancer

Justine Rudewicz , Hayssam Soueidan , Audrey Gros , Gaetan Macgrogan , Hervé Bonnefoi , et al.
BCBB 2014 (Bordeaux Computational Biology and Bioinformatics), Nov 2014, Bordeaux, France
Conference poster hal-01120049v1
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A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships

Claire Lemaitre , Aurélien Barré , Christine Citti , Florence Tardy , François Thiaucourt , et al.
BMC Bioinformatics, 2011, 12 (1), pp.457. ⟨10.1186/1471-2105-12-457⟩
Journal articles hal-00784414v1
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PROTIC workshop: A bioinformatics environment for proteome data validation, analysis and integration

Renaud Flores , Johann J. Joets , Olivier Langella , Benoit B. Valot , Michel M. Zivy , et al.
Plant Genomics seminar 2010, Mar 2010, Pont Royal en Provence, France
Conference papers hal-02758409v1
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Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks

Jonathan Dubois , Ludovic Cottret , Amine Ghozlane , David Auber , Frédéric Bringaud , et al.
16th International Conference on Information Visualization (IV'12), Jul 2012, Montpellier, France. pp.4771a204
Conference papers hal-00742176v1
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Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA).

Anita Burgun , Dina V Oksen , Wolfgang Kuchinke , Hans-Ulrich Prokosch , Thomas Ganslandt , et al.
Studies in Health Technology and Informatics, 2015, 216, pp.1005. ⟨10.3233/978-1-61499-564-7-1005⟩
Journal articles hal-01232643v1
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XEML Interactive designer

Benjamin Dartigues , Kenny Biliau , Cécile Cabasson , Yves Gibon , Joachim Kopka , et al.
Bordeaux Computational Biology and Bioinformatics, Nov 2014, Bordeaux, France. , 1 p., 2014
Conference poster hal-01203290v1
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Utilisation d'une Grille de Calcul (GRISBI) pour le Traitement de Données NGS (New Generation Sequencing)

Florence Maurier , Alexis Groppi , Aurélien Barré , Delphine Naquin , Aurélien Roult , et al.
Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France
Conference papers hal-00653023v1
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Tools and applications in plant metabolomics at Bordeaux Metabolome Fluxome Facility (PMFB; http://www.bordeaux.inra.fr/umr619/NMR.htm)

Catherine C. Deborde , Stéphane Bernillon , Mickael M. Maucourt , Cécile Cabasson , Benoit Biais , et al.
5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France
Conference papers hal-02749839v1
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Reference-free detection of isolated SNPs

Raluca Uricaru , Guillaume Rizk , Vincent Lacroix , Elsa Quillery , Olivier Plantard , et al.
Nucleic Acids Research, 2014, 43 (2), pp.e11. ⟨10.1093/nar/gku1187⟩
Journal articles hal-01083715v1
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MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant NMR metabolomic profiles.

Hélène Ferry-Dumazet , Laurent Gil , Catherine Deborde , Annick Moing , Stéphane Bernillon , et al.
BMC Plant Biology, 2011, 11, pp.104. ⟨10.1186/1471-2229-11-104⟩
Journal articles hal-00645944v1
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A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study.

Jérôme J. Durand , Catherine Bodénès , Emilie Chancerel , Jean-Marc Frigerio , Giovanni Vendramin , et al.
BMC Genomics, 2010, 11 (570), pp.570. ⟨10.1186/1471-2164-11-570⟩
Journal articles hal-00645935v1
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Genome-wide detection of sRNA targets with rNAV

Jonathan Dubois , Amine Ghozlane , Patricia Thebault , Isabelle Dutour , Romain Bourqui
Symposium on Biological Data Visualization, Oct 2013, Atlanta, United States. pp.81 - 88
Conference papers hal-00935443v1
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Développement de méthodes bioinformatiques dédiées à la prédiction et l'analyse des réseaux métaboliques et des ARN non codants

Amine Ghozlane
Informatique [cs]. Université Sciences et Technologies - Bordeaux I, 2012. Français. ⟨NNT : ⟩
Theses tel-01086134v1
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From Genomic to Functional models

Macha Nikolski
Computer Science [cs]. Université Sciences et Technologies - Bordeaux I, 2009
Habilitation à diriger des recherches tel-01086142v1
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Visualization of time-series data in the context of metabolic networks with Systrip Software

Jonathan Dubois , Ludovic Cottret , Amine Ghozlane , David Auber , Frédéric Bringaud , et al.
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France
Conference papers hal-00838725v1
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Mise en place d'un gestionnaire de données léger, pluridisciplinaire et national pour les données scientifiques

David Benaben , C. Biscarat , Yonny Cardenas , Helene Cordier , Pierre Gay , et al.
Rencontres Scientifiques des Utilisateurs de Calcul Intensif, de Cloud Et de Stockage (Journées SUCCES 2013), Nov 2013, Paris, France
Conference papers hal-00927505v1
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Minimum Information About a Simulation Experiment (MIASE)

Dagmar Waltemath , Richard Adams , Daniel A. Beard , Frank T. Bergmann , Upinder S. Bhalla , et al.
PLoS Computational Biology, 2011, 7 (4), pp.e1001122. ⟨10.1371/journal.pcbi.1001122⟩
Journal articles hal-00772491v1
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Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome

Pascal P. Sirand-Pugnet , Carole Lartigue Prat , Marc Marenda , Daniel Jacob , Aurélien Barré , et al.
PLoS Genetics, 2007, 3 (5), pp.e75. ⟨10.1371/journal.pgen.0030075⟩
Journal articles hal-02663589v1
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Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity

Laurent X. Nouvel , Pascal Sirand-Pugnet , Marc S. Marenda , Valérie Barbe , Sophie Mangenot , et al.
BMC Genomics, 2010, 11, pp.86. ⟨10.1186/1471-2164-11-86⟩
Journal articles hal-02660112v1
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Genome wide sequence-based association studies for dissection of important agronomie traits in apricot

Véronique Decroocq , Stéphanie Mariette , Fabienne Wong Jun Tai , Stephane Decroocq , David Tricon , et al.
Plant and Animal Genome XXII Conference, Jan 2014, San Diego, United States
Conference papers hal-02796089v1
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Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny

Amélie Véron , Claire Lemaitre , Christian Gautier , Vincent Lacroix , Marie-France Sagot
BMC Genomics, 2011, 12 (1), pp.303. ⟨10.1186/1471-2164-12-303⟩
Journal articles hal-00784423v1
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Evolutionary History of Contagious Bovine Pleuropneumonia Using Next Generation Sequencing of Mycoplasma mycoides Subsp. mycoides "Small Colony".

Virginie Dupuy , Lucía Manso-Silván , Valérie Barbe , Patricia Thebault , Emilie Dordet-Frisoni , et al.
PLoS ONE, 2012, 7 (10), pp.e46821. ⟨10.1371/journal.pone.0046821⟩
Journal articles hal-00744892v1
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Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak.

Saneyoshi Ueno , Grégoire Le Provost , Valérie Léger , Christophe C. Klopp , Céline Noirot , et al.
BMC Genomics, 2010, 11, pp.650. ⟨10.1186/1471-2164-11-650⟩
Journal articles hal-00645933v1
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Flux analysis of the Trypanosoma brucei glycolysis based on a multi-objective criteria bioinformatic approach, Advances in Bioinfromatics, 2012, in press. International conference with published acts

Amine Ghozlane , Frédéric Bringaud , Hayssam Soueidan , Isabelle Dutour , Fabien Jourdan , et al.
Advances in Bioinformatics, 2012, 2012, 16 p., Article ID 159423. ⟨10.1155/2012/159423⟩
Journal articles hal-00723179v1
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Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas.

Sabine Pereyre , Pascal Sirand-Pugnet , Laure Beven , Alain Charron , Hélène Renaudin , et al.
PLoS Genetics, 2009, 5 (10), pp.e1000677. ⟨10.1371/journal.pgen.1000677⟩
Journal articles hal-00645937v1