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Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins

Christophe Plomion , Céline C. Lalanne , Stéphane Claverol , Hakim Meddour , Annegret Kohler , et al.
Proteomics, 2006, 6 (24), pp.6509-6527. ⟨10.1002/pmic.200600362⟩
Journal articles istex hal-02663888v1

Pôle Métabolome à l'IFR 103 Biologie Végétale Intégrative de Bordeaux

Catherine C. Deborde , Cécile Cabasson , Mickael M. Maucourt , Christel Renaud , Monique Gaudillère , et al.
Premières journées scientifiques, Dec 2005, Toulouse, France
Conference papers hal-02764501v1

Molecular and phenotypic profiling from the base to the crown in maritime pine wood-forming tissue

Jorge Almiro Paiva , Marcelo Arnoldo Garces , A. Alves , Pauline Garnier‐géré , J.C. Rodrigues , et al.
New Phytologist, 2008, 178 (2), pp.283-301. ⟨10.1111/j.1469-8137.2008.02379.x⟩
Journal articles hal-02655721v1

MétaboP: a French initiative supported by Génoplante for the development of analytical and bioinformatic tools for plant metabolomics

Annick Moing , Graham Noctor , Catherine C. Deborde , Mickael M. Maucourt , Christel Renaud , et al.
4. International conference, Apr 2006, Reading, United Kingdom
Conference papers hal-02754317v1

Mery-B : management and analysis of plant metabolomics 1H-NMR profiles

Daniel Jacob , Hélène Ferry-Dumazet , Laurent Gil , Catherine C. Deborde , Stéphane Bernillon , et al.
Metabomeeting 2009, Jul 2009, Norwich, United Kingdom
Conference papers hal-02751144v1

iRNA: Integrative pipeline for genome-wide detection of sRNA targets

Amine Ghozlane , Jonathan Dubois , Isabelle Dutour , Romain Bourqui , Marc Breton , et al.
"Autour des ARNs non codant" - Rencontre bioinformatique 2012, Feb 2012, Toulouse, France
Conference papers hal-00695794v1

Analyse NGS sur infrastructure distribuée

Tiphaine Martin
Journées GRISBI 2011 : scientifiques et technologique, Christophe Blanchet and Christophe Caron and Olivier Collin and Stéphane Delmotte and Clément Gauthey and Tiphaine Martin and Franck Samson and Bruno Spataro, May 2011, Lyon, France
Conference papers inria-00614481v1

Genolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes.

David James Sherman , Tiphaine Martin , Macha Nikolski , Cyril Cayla , Jean-Luc Souciet , et al.
Nucleic Acids Research, 2009, 37, pp.D550-D554. ⟨10.1093/nar/gkn859⟩
Journal articles inria-00341578v1

A comparative genome analysis identifies distinct genetic markers of oenococcus oeni possibly involved in the adaptation to wine.

Arnaud Delaherche , Elisabeth Bon , Claire Le Marrec , Aline Lonvaud-Funel
8th International Symposium on Lactic Acid Bacteria (LAB8), Aug 2005, Egmond aan Zee, Netherlands. pp.L017
Conference papers inria-00395778v1

Intraspecific diversity of Oenococcus oeni strains determined by sequence analysis of target genes.

Arnaud Delaherche , Elisabeth Bon , Aurelien Dupé , Megumi Lucas , Benoit Arveiler , et al.
Applied Microbiology and Biotechnology, 2006, 73 (2), pp.394-403. ⟨10.1007/s00253-006-0487-2⟩
Journal articles istex inria-00339828v1

ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome

Michael J. Taussing , Oda Stoevesandt , Carl a K Borrebaeck , Andrew R Bradbury , Dolores Cahill , et al.
Nature Methods, 2007, 4, pp.13-17. ⟨10.1038/nmeth0107-13⟩
Journal articles hal-00306585v1

An introduction to metabolic networks and their structural analysis.

Vincent Lacroix , Ludovic Cottret , Patricia Thebault , Marie-France Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2008, 5 (4), pp.594-617. ⟨10.1109/TCBB.2008.79⟩
Journal articles hal-00355497v1

Further Steps in TANGO: improved taxonomic assignment in metagenomics

Macha Nikolski , Daniel Alonso-Alemany , Aurélien Barré , Stefano Beretta , Paola Bonizzoni , et al.
Bioinformatics, 2013, pp.10.1093/bioinformatics/btt256. ⟨10.1093/bioinformatics/btt256⟩
Journal articles hal-00848263v1

MolliGen 3.0, evolution of a database dedicated to the comparative genomics of mollicutes

Aurélien Barré , Claire Lemaitre , Patricia Thebault , Antoine de Daruvar , Alain Blanchard , et al.
Congress of the International Organization for Mycoplasmology ; 2010/07/11-16 ; Chianciano Terme (ITA). IOM congress 2010., 2010, Italy
Conference papers hal-00649151v1

CBIB/MaBioVis : noeud Bordelais de GRISBI

Tiphaine Martin
BIOinformatique à GRAnde échelLE - BIOGRALE 2008, Christophe CARON and Olivier COLLIN and Antoine de DARUVAR and Gael EVEN and Hugues LEROY and Tiphaine MARTIN and Claudine MEDIGUE and Frédéric PLEWNIAK and Bruno SPATARO and Christophe BLANCHET, Nov 2008, Lyon, France
Conference papers inria-00614465v1

Utilisation d'une Grille de Calcul (GRISBI) pour le Traitement de Données NGS

Florence Maurier , Alexis Groppi , Aurélien Barré , Delphine Naquin , Aurelien Roult , et al.
JOBIM 2011, Jun 2011, Paris, France
Conference papers inria-00614489v1

Molecular typing of wine yeast strains Saccharomyces uvarum using microsatellite markers

Isabelle Masneuf-Pomarède , C. Lejeune , Pascal Durrens , M. Lollier , Michel Aigle , et al.
Systematic and Applied Microbiology, 2007, 30, pp.75-82. ⟨10.1016/j.syapm.2006.02.006⟩
Journal articles istex hal-00306666v1

Insights into genome plasticity of the wine-making bacterium Oenococcus oeni strain ATCC BAA-1163 by decryption of its whole genome.

Elisabeth Bon , Cosette Granvalet , Fabienne Remize , Diliana Dimova , Patrick Lucas , et al.
9th Symposium on Lactic Acid Bacteria, Sep 2008, Egmond aan Zee, Netherlands. pp.A047
Conference papers inria-00340073v1

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model

Mohammed El-Kebir , Hayssam Soueidan , Thomas Hume , Daniela Beisser , Marcus Dittrich , et al.
Bioinformatics, 2015, 31 (19), ⟨10.1093/bioinformatics/btv316⟩
Journal articles hal-01248545v1

Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Reza Salek , Steffen Neumann , Daniel Schober , Jan Hummel , Kenny Billiau , et al.
Metabolomics, 2015, 11 (6), pp.1598-1599. ⟨10.1007/s11306-015-0822-7⟩
Journal articles hal-02630736v1

Changing paradigm on the evolution of Mycoplasmas by exploring their pan-genome.

Christine Citti , Xavier X. Nouvel , Emilie Dordet-Frisoni , Marc Serge Marenda , Florence Tardy , et al.
112th General meeting of American society for Microbiology (ASM), Jun 2012, San Franscisco, United States
Conference papers hal-02933364v1

Proteomic analysis during ontogenesis of secondary xylem in maritime pine

Marcelo Arnoldo Garces , Grégoire G. Le Provost , Céline C. Lalanne , Stéphane Claverol , Aurélien Barré , et al.
Tree Physiology, 2014, 34 (11), pp.1263-1277. ⟨10.1093/treephys/tpt117⟩
Journal articles hal-02632854v1

OENOCOCCUS OENI (alias Leuconostoc oenos) UNE BACTERIE LACTIQUE DU VIN. QUE NOUS APPORTE LE SEQUENCAGE DE SON GENOME?

Elisabeth Bon , Patrick Lucas , Antoine de Daruvar , Aline Lonvaud-Funel
Rencontres Annuelles de l'ISVV, Institut des Sciences de la Vigne et du Vin (ISVV). Villenave d'Ornon, FRA., Jun 2008, Bordeaux, France
Conference papers inria-00407904v1

The proteome of maritime pine wood forming tissue

Jean-Marc Gion , Céline Lalanne , Grégoire Le Provost , Hélène Ferry-Dumazet , Jorge Paiva , et al.
Proteomics, 2005, 5, pp.3731-3751
Journal articles hal-00306580v1

Genetic markers for characterisation of the adaptability of oenococcus to wine

Arnaud Delaherche , Emmanuel Gindreau , Elisabeth Bon , Aline Lonvaud-Funel
8th International Symposium on Lactic Acid Bacteria (LAB8), Aug 2005, Egmond aan Zee, Netherlands
Conference papers inria-00395779v1

Présentation des Centres Bioinformatiques Régionaux : RENABI-GO

Tiphaine Martin , Christophe C. Caron , Olivier Collin
Journées GRISBI 2011 : scientifiques et technologique, Christophe Blanchet and Christophe Caron and Olivier Collin and Stéphane Delmotte and Clément Gauthey and Tiphaine Martin and Franck Samson and Bruno Spataro, May 2011, Lyon, France
Conference papers inria-00614475v1

An integrative genomics approach for deciphering the complex interactions between ascorbate metabolism and fruit growth and composition in tomato.

Virginie Garcia , Rebecca Stevens , Laurent Gil , Louise Gilbert , Noé Gest , et al.
Comptes Rendus Biologies, 2009, 332 (11), pp.1007-21. ⟨10.1016/j.crvi.2009.09.013⟩
Journal articles istex hal-00645936v1

A visualization approach to analyse bacterial sRNA-mediated regulatory networks

Jonathan Dubois , Amine Ghozlane , Patricia Thébault , Isabelle Dutour , Romain Bourqui
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France. pp.Poster
Conference papers hal-00838731v1

Data standards can boost metabolomics research, and if there is a will, there is a way

Philippe Rocca-Serra , Reza M. Salek , Masanori Arita , Elon Correa , Saravanan Dayalan , et al.
Journal articles hal-01232411v1

Finishing bacterial genome assemblies with Mix

Hayssam Soueidan , Florence Maurier , Alexis Groppi , Pascal Sirand-Pugnet , Florence Tardy , et al.
BMC Bioinformatics, 2013, pp.doi:10.1186/1471-2105-14-S15-S16
Journal articles hal-00879163v1