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Deposit type : Notice

Microbiomes and Holobionts

Derek Skillings , Katarzyna B Hooks
Reference Module in Earth Systems and Environmental Sciences, 2018
Book sections hal-01893113v1

Argininosuccinate synthase 1 (ASS1): A marker of unclassified hepatocellular adenoma and high bleeding risk

E Henriet , Aa Hammoud , Jw Dupuy , B Dartigues , Z Ezzoukry , et al.
Hepatology, 2017, ⟨10.1002/hep.29336⟩
Journal articles hal-01550711v1

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model

Mohammed El-Kebir , Hayssam Soueidan , Thomas Hume , Daniela Beisser , Marcus Dittrich , et al.
Bioinformatics, 2015, 31 (19), ⟨10.1093/bioinformatics/btv316⟩
Journal articles hal-01248545v1

Data standards can boost metabolomics research, and if there is a will, there is a way

Philippe Rocca-Serra , Reza M. Salek , Masanori Arita , Elon Correa , Saravanan Dayalan , et al.
Journal articles hal-01232411v1


Camille Tumiotto , Pantxika Bellecave , Patricia Recordon-Pinson , Alexi Groppi , Macha Nikolski , et al.
AIDS Research and Human Retroviruses, 2018, ⟨10.1089/AID.2017.0298⟩
Journal articles hal-01727265v1

Divergent wiring of repressive and active chromatin interactions between mouse embryonic and trophoblast lineages

Stefan Schoenfelder , Borbala Mifsud , Claire Senner , Christopher Todd , Stephanie Chrysanthou , et al.
Nature Communications, 2018, 9 (1), ⟨10.1038/s41467-018-06666-4⟩
Journal articles hal-01893053v1

Deciphering the complex role of thrombospondin-1 in glioblastoma development

Thomas Daubon , Céline Léon , Kim Clarke , Laetitia Andrique , Laura Salabert , et al.
Nature Communications, 2019, 10 (1), ⟨10.1038/s41467-019-08480-y⟩
Journal articles hal-03453984v1

Genome-wide association links candidate genes to resistance to Plum Pox Virus in apricot (Prunus armeniaca)

Stéphanie Mariette , Fabienne Wong Jun Tai , Guillaume Roch , Aurélien Barré , Aurélie Chague , et al.
New Phytologist, 2016, 209 (2), DOI: 10.1111/nph.13627. ⟨10.1111/nph.13627⟩
Journal articles hal-01198840v1

Contrasting Strategies: Human Eukaryotic versus Bacterial Microbiome Research

Katarzyna B Hooks , Maureen O'Malley
Journal of Eukaryotic Microbiology, 2019, ⟨10.1111/jeu.12766⟩
Journal articles hal-02306562v1

Engineering selective competitors for the discrimination of highly conserved protein-protein interaction modules

Charlotte Rimbault , Kashyap Maruthi , Christelle Breillat , Camille Genuer , Sara Crespillo , et al.
Nature Communications, 2019, 10 (1), pp.4521. ⟨10.1038/s41467-019-12528-4⟩
Journal articles hal-02323594v1

Complete Genome Sequence of Mycoplasma mycoides subsp. mycoides T1/44, a Vaccine Strain against Contagious Bovine Pleuropneumonia

Géraldine Gourgues , Aurélien Barré , Emmanuel Beaudoing , Johann Weber , Ghislaine Magdelenat , et al.
Genome Announcements, 2016, 4 (2), pp.e00263-16. ⟨10.1128/genomeA.00263-16⟩
Journal articles hal-01384699v1

Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Reza Salek , Steffen Neumann , Daniel Schober , Jan Hummel , Kenny Billiau , et al.
Metabolomics, 2015, 11 (6), pp.1598-1599. ⟨10.1007/s11306-015-0822-7⟩
Journal articles hal-02630736v1

Complete genome sequence of Mycoplasma mycoides subsp. mycoides T1/44, vaccine strain against contagious bovine pleuropneumonia

Géraldine Gourgues , Aurélien Barré , Emmanuel Beaudoing , Johann Weber , Ghislaine Magdelenat , et al.
IOM 2016 - 21. Congress of the International Organization for Mycoplasmology, Jul 2016, Brisbane, Australia. 2016
Conference poster hal-02743313v1

Baseline co-medications may alter the anti-tumoural effect of checkpoint inhibitors as well as the risk of immune-related adverse events

Marie Kostine , Eleonora Mauric , Alice Tison , Thomas Barnetche , Aurélien Barre , et al.
European Journal of Cancer, 2021, 157, pp.474-484. ⟨10.1016/j.ejca.2021.08.036⟩
Journal articles hal-03671495v1

MICADo - Looking for mutations in targeted PacBio cancer data: an alignment-free method

Justine Rudewicz , Hayssam Soueidan , Raluca Uricaru , Hervé Bonnefoi , Richard Iggo , et al.
Frontiers in Genetics, 2016, ⟨10.3389/fgene.2016.00214⟩
Journal articles hal-01409750v1

Aptamer selection by direct microfluidic recovery and surface plasmon resonance evaluation

Eric Dausse , Aurélien Barré , Aimé Ahissan , Alexis Groppi , Alain Rico , et al.
Biosensors and Bioelectronics, 2016
Journal articles hal-01269677v1


Serena Scollen , Jordi Rambla , Mikael Linden , Sabela de La Torre , Alfred Gil , et al.
Journal articles hal-01528108v1

Effects of Lumacaftor-Ivacaftor on Airway Microbiota-Mycobiota and Inflammation in Patients with Cystic Fibrosis Appear To Be Linked to Pseudomonas aeruginosa Chronic Colonization

Raphael Enaud , Florian Lussac-Sorton , Elena Charpentier , Lourdes Velo-Suárez , Jennifer Guiraud , et al.
Microbiology Spectrum, 2023, 11 (2), ⟨10.1128/spectrum.02251-22⟩
Journal articles hal-04080774v1

Clinical and genomic analysis of a randomised phase II study evaluating anastrozole and fulvestrant in postmenopausal patients treated for large operable or locally advanced hormone-receptor-positive breast cancer.

Nathalie Quenel-Tueux , Marc Debled , Justine Rudewicz , Gaetan Macgrogan , Marina Pulido , et al.
British Journal of Cancer, 2015, pp.bjc.2015.247. ⟨10.1038/bjc.2015.247⟩
Journal articles hal-01180992v1

GCN2 phosphorylates HIV-1 integrase and decreases HIV-1 replication by limiting viral integration

A. Jaspart , C. Calmels , O. Cosnefroy , P. Bellecave , P. Pinson , et al.
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-02276-0⟩
Journal articles hal-01682348v1

A Peptide Targeting Inflammatory CNS Lesions in the EAE Rat Model of Multiple Sclerosis

Claudine Boiziau , Macha Nikolski , Elodie Mordelet , Justine Aussudre , Karina Vargas-Sanchez , et al.
Journal articles hal-01727277v1

Causal clarity and deeper dimensions in microbiota-gut-brain research

Katarzyna B Hooks , Jan Pieter J. P. Konsman , Maureen O'Malley
Behavioral and Brain Sciences, 2019, 42, ⟨10.1017/S0140525X19000050⟩
Journal articles hal-02190929v1

Deep learning model for automatic segmentation of lungs and pulmonary metastasis in small animal MR images

Edgar Lefevre , Emmanuel Bouilhol , Antoine Chauvière , Wilfried Souleyreau , Marie-Alix Derieppe , et al.
Frontiers in Bioinformatics, 2022, 2, ⟨10.3389/fbinf.2022.999700⟩
Journal articles hal-03821458v1

Microbiota-gut-brain research: a critical analysis

Katarzyna B Hooks , Jan Pieter J. P. Konsman , Maureen O'Malley
Behavioral and Brain Sciences, In press, pp.1 - 40. ⟨10.1017/S0140525X18002133⟩
Journal articles hal-01893076v1

Hepatocellular Carcinoma Immune Landscape and the Potential of Immunotherapies

Julie Giraud , Domitille Chalopin , Jean-Frédéric Blanc , Maya Saleh
Frontiers in Immunology, 2021, 12, ⟨10.3389/fimmu.2021.655697⟩
Journal articles hal-03257979v1

Impact of intravenous antibiotics on the gut microbiota in children with cystic fibrosis

R. Enaud , T. Bazin , A. Barré , T. Barnetche , Cédric Hubert , et al.
40th European Cystic Fibrosis Conference, 2017, Sevilla, Spain. ⟨10.1016/S1569-1993(17)30537-4⟩
Conference papers hal-01534674v1

Antibodies against HLA cross-reactivity groups: From single antigen bead assay to immunoinformatics interpretation of epitopes

Cédric Usureau , Edgar Lefèvre , Isabelle Top , Macha Nikolski , Pauline Varlet , et al.
Molecular Immunology, 2021, 133, pp.154-162. ⟨10.1016/j.molimm.2021.02.020⟩
Journal articles hal-03169872v1

Lactate dehydrogenases promote glioblastoma growth and invasion via a metabolic symbiosis

Joris Guyon , Ignacio Fernandez-Moncada , Claire Larrieu , Cyrielle Bouchez , Antonio Pagano Zottola , et al.
EMBO Molecular Medicine, 2022, ⟨10.15252/emmm.202115343⟩
Journal articles hal-03827725v1

Proteomic analysis identifies argininosuccinate synthase 1 as a useful biomarker for hepatocellular adenoma classification and patient management

A. Abouhammoud , E. Henriet , J.-W. Dupuy , B. Dartigues , Z. Ezzoukhry , et al.
The International Liver Congress, 2017, Amsterdam, Netherlands. 2017, ⟨10.1016/S0168-8278(17)30758-4⟩
Conference poster hal-01528470v1

A putative role for Discoidin Domain Receptor 1 in cancer chemoresistance

Chiara Ambrogio , Elodie Darbo , Sam Lee , David Santamaría
Cell Adhesion and Migration, 2018, pp.01 - 09. ⟨10.1080/19336918.2018.1445954⟩
Journal articles hal-01724027v1