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Modeling transcription factor combinatorics in promoters and enhancers

Jimmy Vandel , Océane Cassan , Sophie Lèbre , Charles-Henri Lecellier , Laurent Brehelin
2018
Preprints, Working Papers, ... hal-01821485v1
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The AdaptSgenoLasso, an extended version of the SgenoLasso, for gene mapping and for genomic prediction using the extremes

Charles-Elie Rabier , Céline Delmas
2023
Preprints, Working Papers, ... hal-04059080v1
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Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes

Christophe Menichelli , Vincent Guitard , Rafael Miyazawa Martins , Sophie Lèbre , José Juan Lopez-Rubio , et al.
PLoS Computational Biology, 2021, 17 (4), pp.e1008909. ⟨10.1371/journal.pcbi.1008909⟩
Journal articles hal-03253460v1
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Probing transcription factor combinatorics in different promoter classes and in enhancers

Jimmy Vandel , Océane Cassan , Sophie Lèbre , Charles-Henri Lecellier , Laurent Brehelin
BMC Genomics, 2019, 20 (103), ⟨10.1186/s12864-018-5408-0⟩
Journal articles hal-02070201v1
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Identification de déterminants génomiques impliqués dans la spécificité de fixation des facteurs de transcription.

Raphaël Romero
Génomique, Transcriptomique et Protéomique [q-bio.GN]. Université Montpellier, 2021. Français. ⟨NNT : 2021MONTS119⟩
Theses tel-03635893v1
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Genomics of Multiple Myeloma

Sébastien Robiou-Du-Pont , Alice Cleynen , Charlotte Fontan , Michel Attal , Nikhil C Munshi , et al.
Journal of Clinical Oncology, 2017, 35 (9), pp.963-967. ⟨10.1200/JCO.2016.70.6705⟩
Journal articles hal-01813387v1
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Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes

Christophe Menichelli , Vincent Guitard , Rafael Martins , Sophie Lèbre , José‑juan Lopez‑rubio , et al.
2020
Preprints, Working Papers, ... hal-03024898v1
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Fra-1 regulates its target genes via binding to remote enhancers without exerting major control on chromatin architecture in triple negative breast cancers

Fabienne Bejjani , Claire Tolza , Mathias Boulanger , Damien Downes , Raphaël Romero , et al.
Nucleic Acids Research, 2021, 49 (5), pp.2488-2508. ⟨10.1093/nar/gkab053⟩
Journal articles hal-03253453v1
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Systematic analysis of the genomic features involved in the binding preferences of transcription factors

Raphaël Romero , Christophe Menichelli , Jean-Michel Marin , Sophie Lèbre , Charles-Henri Lecellier , et al.
2022
Preprints, Working Papers, ... hal-03796420v1