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Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis

Ghislain Durif , Laurent Modolo , Jeff E Mold , Sophie Lambert-Lacroix , Franck Picard
Bioinformatics, 2019, 35, 20, pp.4011-4019. ⟨10.1093/bioinformatics/btz177⟩
Journal articles hal-01649275v3
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Supervised Reconstruction of Biological Networks with Local Models

Kevin Bleakley , Gérard Biau , Jean-Philippe Vert
2007
Preprints, Working Papers, ... hal-00130277v1

Detection of orthologous genes with expression shifts linked to nickel hyperaccumulation across Eudicots

Mélina Gallopin , Christine Drevet , Vanesa S. Garcia de la Torre , Sarah Jelassi , Marie Michel , et al.
2022
Preprints, Working Papers, ... hal-03835818v1
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IMGT standardization for statistical analyses of T cell receptor junctions: the TRAV-TRAJ example

Kevin Bleakley , Véronique Giudicelli , Yan Wu , Marie-Paule Lefranc , Gérard Biau
In Silico Biology, 2006, 6 (6), pp.573-588
Journal articles hal-00121667v1
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Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes

Christophe Menichelli , Vincent Guitard , Rafael Miyazawa Martins , Sophie Lèbre , José Juan Lopez-Rubio , et al.
PLoS Computational Biology, 2021, 17 (4), pp.e1008909. ⟨10.1371/journal.pcbi.1008909⟩
Journal articles hal-03253460v1

A systematic analysis of the genomic features involved in specificities of transcription factor binding

Raphaël Romero , Jean-Michel Marin , Sophie Lèbre , Charles-Henri Lecellier , Laurent Brehelin
JOBIM 2021 - 21èmes Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2021, Paris, France
Conference papers hal-03385869v1
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Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes

Christophe Menichelli , Vincent Guitard , Rafael Martins , Sophie Lèbre , José‑juan Lopez‑rubio , et al.
2020
Preprints, Working Papers, ... hal-03024898v1
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Fra-1 regulates its target genes via binding to remote enhancers without exerting major control on chromatin architecture in triple negative breast cancers

Fabienne Bejjani , Claire Tolza , Mathias Boulanger , Damien Downes , Raphaël Romero , et al.
Nucleic Acids Research, 2021, 49 (5), pp.2488-2508. ⟨10.1093/nar/gkab053⟩
Journal articles hal-03253453v1
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Systematic analysis of the genomic features involved in the binding preferences of transcription factors

Raphaël Romero , Christophe Menichelli , Jean-Michel Marin , Sophie Lèbre , Charles-Henri Lecellier , et al.
2022
Preprints, Working Papers, ... hal-03796420v1
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Parsimony‐based test for identifying changes in evolutionary trends for quantitative characters: implications for the origin of the amniotic egg

Gilles Didier , Olivier Chabrol , Michel Laurin
Cladistics, 2019, 35 (5), pp.576-599. ⟨10.1111/cla.12371⟩
Journal articles hal-01609238v1