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Maximum likelihood inference comparing sequence and allelic markers in a population of variable size: an Importance Sampling approach

Champak Beeravolu Reddy , Francois Rousset , Pierre Pudlo , Raphaël Leblois
Mathematical and Computational Evolutionnary Biology 2012, Jun 2012, Montpellier, France. , 2012
Conference poster hal-02932322v1
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The fossil record of camelids demonstrates a late divergence between Bactrian camel and dromedary

Denis Geraads , Gilles Didier , Andrew Barr , Denné Reed , Michel Laurin
Acta Palaeontologica Polonica, 2020, 65 (2), pp.251-260. ⟨10.4202/app.00727.2020⟩
Journal articles hal-02895911v1
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Acceleration of important sampling methods for the calculation of likelihood in population genetics

Coralie Merle , Raphaël Leblois , J.-M Marin , P Pudlo , F. Rousset
Day of The Institute for Computational Biology (IBC), May 2014, Montpellier, France. 2014
Conference poster hal-02932305v1
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Unveiling African rainforest composition and vulnerability to global change

M. Réjou-Méchain , Frédéric Mortier , Jean-François Bastin , Guillaume Cornu , Nicolas Barbier , et al.
Nature, 2021, 593, pp.90-94. ⟨10.1038/s41586-021-03483-6⟩
Journal articles hal-03205277v1
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Distributions of extinction times from fossil ages and tree topologies: the example of mid-Permian synapsid extinctions

Gilles Didier , Michel Laurin
PeerJ, 2021, 9, pp.e12577. ⟨10.7717/peerj.12577⟩
Journal articles hal-03258099v3
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Modèles d’évolution de caractères continus

Paul Bastide , Mahendra Mariadassou , Stéphane Robin
Modèles et méthodes pour l’évolution biologique, ISTE Group, pp.47 - 85, 2022, ⟨10.51926/iste.9069.ch3⟩
Book sections hal-03762880v1

Detecting past contraction in population size using runs of homozygosity

Coralie Merle , Raphaël Leblois , Jean-Michel Marin , François Rousset
48èmes Journées de Statistique de la SFdS, May 2016, Montpellier, France
Conference papers hal-02932426v1
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Joint inference of adaptive and demographic history from temporal population genomic data

Vitor A. C. Pavinato , Stéphane de Mita , Jean-Michel Marin , Miguel de Navascués
Peer Community Journal, 2022, 2, pp.e78. ⟨10.24072/pcjournal.203⟩
Journal articles hal-04179331v1
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Filling the gap between individual-based evolutionary models and Hamilton-Jacobi equations

Nicolas Champagnat , Sylvie Méléard , Sepideh Mirrahimi , Viet-Chi Tran
Preprints, Working Papers, ... hal-03656608v2
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Positive selection of senescence through increased evolvability: ageing is not a by-product of evolution

Tristan Roget , Pierre Jolivet , Sylvie Méléard , Michael Rera
Preprints, Working Papers, ... hal-03798671v1
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Dynamics of dirac concentrations in the evolution of quantitative alleles with sexual reproduction

L Dekens , S Mirrahimi
Nonlinearity, 2022, ⟨10.1088/1361-6544/ac91bb⟩
Journal articles hal-03501985v2

Modèles et méthodes pour l’évolution biologique

Gilles Didier , Stéphane Guindon
iSTE Edition, 330 p., 2022, 9781789480696
Books lirmm-03766511v1
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Probabilities of tree topologies with temporal constraints and diversification shifts

Gilles Didier
Peer Community Journal, 2021, 1, pp.e65. ⟨10.24072/pcjournal.73⟩
Journal articles hal-01865425v1
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Detecting past contraction in population size using haplotype homozygosity

C Merle , Jean-Michel Marin , F. Rousset , Raphaël Leblois
Mathematical and Computational Evolutionnary Biology 2016, Jun 2016, Montpellier, France.
Conference poster hal-02932275v1
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Arbres : Combinatoire et Modèles

Gilles Didier , Stéphane Guindon
iSTE Edition. Modèles et méthodes pour l’évolution biologique, Chapitre 1, pp.7-32, 2022, 9781789480696. ⟨10.51926/ISTE.9069.ch1⟩
Book sections hal-03485566v1
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Testing for correlation between traits under directional evolution

Manuela Royer-Carenzi , Gilles Didier
Journal of Theoretical Biology, 2019, 482, ⟨10.1016/j.jtbi.2019.08.013⟩
Journal articles hal-02057232v1

Benchmark of Differential Gene Expression Analysis Methods for Inter-species RNA-Seq Data using a Phylogenetic Simulation Framework

Paul Bastide , Charlotte Soneson , Olivier Lespinet , Mélina Gallopin
Preprints, Working Papers, ... hal-03837544v1
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Resampling : an improvement in varying population size models

Coralie Merle , Raphaël Leblois , Pierre Pudlo
Mathematical and Computational Evolutionnary Biology 2015, Jun 2015, Porquerolles, France. , 2015
Conference poster hal-02932290v1

Editorial: Timetrees: Incorporating fossils and molecules

Michel Laurin , Gilles Didier , Rachel Warnock
Frontiers in Genetics, 2022, 13, ⟨10.3389/fgene.2022.937763⟩
Journal articles hal-03709640v1

Accounting for intraspecific variation in continuous trait evolution on a reticulate phylogeny

Benjamin Teo , Jeffrey Rose , Paul Bastide , Cécile Ané
Preprints, Working Papers, ... hal-03837540v1
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The Cauchy Process on Phylogenies: a Tractable Model for Pulsed Evolution

Paul Bastide , Gilles Didier
Systematic Biology, In press, ⟨10.1093/sysbio/syad053⟩
Journal articles hal-04061506v2

Empirical likelihood for Bayesian inference in population genetics

Pierre Pudlo , Raphaël Leblois , Christian Robert
Mathematical and Computational Evolutionnary Biology 2012, Jun 2012, Montpellier, France
Conference papers hal-02932407v1
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Exact distribution of divergence times from fossil ages and tree topologies

Gilles Didier , Michel Laurin
Systematic Biology, 2020, 69 (6), pp.1068-1087. ⟨10.1101/490003⟩
Journal articles hal-01952736v1
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Parsimony‐based test for identifying changes in evolutionary trends for quantitative characters: implications for the origin of the amniotic egg

Gilles Didier , Olivier Chabrol , Michel Laurin
Cladistics, 2019, 35 (5), pp.576-599. ⟨10.1111/cla.12371⟩
Journal articles hal-01609238v1