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Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite

Océane Cassan , Sophie Lèbre , Antoine Martin
BMC Genomics, 2021, 22 (1), pp.387. ⟨10.1186/s12864-021-07659-2⟩
Journal articles hal-03246141v1

GeneCloud Reveals Semantic Enrichment in Lists of Gene Descriptions

Gabriel Krouk , Clément Carré , Cecile Fizames , Alain Gojon , Sandrine Ruffel , et al.
Plant Molecular Biology, 2015, 8 (6), pp.971-973. ⟨10.1016/j.molp.2015.02.005⟩
Journal articles hal-01180663v1

Apple shoot architecture: evidence for strong variability of bud size and composition and hydraulics within a branching zone

Pierre-Eric Lauri , Guillaume Bourdel , Catherine Trottier , Hervé Cochard
New Phytologist, 2008, 178 (4), pp.798-807. ⟨10.1111/j.1469-8137.2008.02416.x⟩
Journal articles hal-01189394v1
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Integrative models for analyzing jointly shoot growth and branching patterns

Jean Peyhardi , Evelyne Costes , Yves Caraglio , Pierre-Eric Lauri , Catherine Trottier , et al.
7th International Workshop on Functional Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.207-209
Conference papers hal-00808264v1

Detection of orthologous genes with expression shifts linked to nickel hyperaccumulation across Eudicots

Mélina Gallopin , Christine Drevet , Vanesa S. Garcia de la Torre , Sarah Jelassi , Marie Michel , et al.
Preprints, Working Papers, ... hal-03835818v1
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Unveiling African rainforest composition and vulnerability to global change

M. Réjou-Méchain , Frédéric Mortier , Jean-François Bastin , Guillaume Cornu , Nicolas Barbier , et al.
Nature, 2021, 593, pp.90-94. ⟨10.1038/s41586-021-03483-6⟩
Journal articles hal-03205277v1
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Natural genetic variation underlying the negative effect of elevated CO2 on ionome composition in Arabidopsis thaliana

Oceane Cassan , Lea-Lou Pimpare , Mozzanino Timothy , Cecile Fizames , Sebastien Devidal , et al.
Preprints, Working Papers, ... hal-04121939v1
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Reverse engineering highlights potential principles of large gene regulatory network design and learning.

Clement Carre , André Mas , Gabriel Krouk
npj Systems Biology and Applications, 2017, 3, pp.17. ⟨10.1038/s41540-017-0019-y⟩
Journal articles hal-01573563v1

Identifying ontogenetic, environmental and individual components of forest tree growth

Florence Chaubert-Pereira , Yves Caraglio , Christian Lavergne , Yann Guédon
Annals of Botany, 2009, 104 (5), pp.883-896. ⟨10.1093/aob/mcp189⟩
Journal articles hal-00423945v1

Integrative models for joint analysis of shoot growth and branching patterns

Jean Peyhardi , Yves Caraglio , Evelyne Costes , Pierre-Eric Lauri , Catherine Trottier , et al.
New Phytologist, 2017, 216 (4), pp.1291-1304. ⟨10.1111/nph.14742⟩
Journal articles hal-01606754v1
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Full epistatic interaction maps retrieve part of missing heritability and improve phenotypic prediction

Clément Carré , Jean Baptiste Carluer , Christian Chaux , Nicolas Roche , André Mas , et al.
Preprints, Working Papers, ... hal-03749709v1
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A gene regulatory network in Arabidopsis roots reveals features and regulators of the plant response to elevated CO 2

Océane Cassan , Léa‐lou Pimparé , Christian Dubos , Alain Gojon , Liên Bach , et al.
New Phytologist, 2023, 239 (3), pp.992-1004. ⟨10.1111/nph.18788⟩
Journal articles hal-04145286v1
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Effects of shoot bending on lateral fate and hydraulics: invariant and changing traits across five apple genotypes

Hyun Hee Han , Catherine Coutand , Hervé Cochard , Catherine Trottier , Pierre-Eric Lauri
Journal of Experimental Botany, 2007, 58 (13), pp.3537-3547. ⟨10.1093/jxb/erm200⟩
Journal articles hal-01189253v1
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Markov and semi-Markov switching linear mixed models for identifying forest tree growth components.

Florence Chaubert-Pereira , Yann Guédon , Christian Lavergne , Catherine Trottier
[Research Report] RR-6618, INRIA. 2008
Reports inria-00311588v1
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New insights for estimating the genetic value of F1 apple progenies for irregular bearing during the first years of tree production

Jean-Baptiste Durand , Baptiste Guitton , Jean Peyhardi , Yan Holtz , Yann Guédon , et al.
Journal of Experimental Botany, 2013, 64 (16), pp.5099-5113. ⟨10.1093/jxb/ert297⟩
Journal articles hal-00845353v1