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Detecting past contraction in population size using runs of homozygosity

Coralie Merle , Raphaël Leblois , Jean-Michel Marin , François Rousset
48èmes Journées de Statistique de la SFdS, May 2016, Montpellier, France
Conference papers hal-02932426v1

The SgenoLasso for gene mapping and genomic prediction

Charles-Elie Rabier , Céline Delmas
24th International Conference on Computational Statistics, Aug 2022, Bologne, Italy
Conference papers hal-03811758v1

Bayesian computation via empirical likelihood.

Kerrie L Mengersen , Pierre Pudlo , Christian Robert
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (4), pp.1321-1326. ⟨10.1073/pnas.1208827110⟩
Journal articles hal-00796976v1
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Using positional information for predicting transcription factor binding sites

Raphaël Romero , Christophe Menichelli , Jean-Michel Marin , Sophie Lèbre , Charles-Henri Lecellier , et al.
SMPGD: Statistical Methods for Post Genomic Data, Jan 2019, Barcelone, Spain.
Conference poster hal-02068254v1
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Joint inference of adaptive and demographic history from temporal population genomic data

Vitor A. C. Pavinato , Stéphane de Mita , Jean-Michel Marin , Miguel de Navascués
Peer Community Journal, 2022, 2, pp.e78. ⟨10.24072/pcjournal.203⟩
Journal articles hal-04179331v1
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Acceleration of important sampling methods for the calculation of likelihood in population genetics

Coralie Merle , Raphaël Leblois , J.-M Marin , P Pudlo , F. Rousset
Day of The Institute for Computational Biology (IBC), May 2014, Montpellier, France. 2014
Conference poster hal-02932305v1

Polycomb-dependent Regulatory Contacts between Distant Hox Loci in Drosophila

Frederic Bantignies , Virginie Roure , Itys Comet , Benjamin Leblanc , Bernd Schuettengruber , et al.
Cell, 2011, 144 (2), pp.214-226. ⟨10.1016/j.cell.2010.12.026⟩
Journal articles hal-00575083v1
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The SgenoLasso and its cousins for selective genotyping and extreme sampling: application to association studies and genomic selection

Charles-Elie Rabier , Céline Delmas
Statistics, 2021, 55 (1), pp. 18-44. ⟨10.1080/02331888.2021.1881785⟩
Journal articles hal-02123295v5

Detection of orthologous genes with expression shifts linked to nickel hyperaccumulation across Eudicots

Mélina Gallopin , Christine Drevet , Vanesa S. Garcia de la Torre , Sarah Jelassi , Marie Michel , et al.
Preprints, Working Papers, ... hal-03835818v1

Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping.

Mathieu Gautier , Julien Foucaud , Karim Gharbi , Timothée Cézard , Maxime Galan , et al.
Molecular Ecology, 2013, 22 (14), pp.3766-79. ⟨10.1111/mec.12360⟩
Journal articles istex hal-00860608v1
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Maximum likelihood inference comparing sequence and allelic markers in a population of variable size: an Importance Sampling approach

Champak Beeravolu Reddy , Francois Rousset , Pierre Pudlo , Raphaël Leblois
Mathematical and Computational Evolutionnary Biology 2012, Jun 2012, Montpellier, France. , 2012
Conference poster hal-02932322v1
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MEIS1 variant as a determinant of autonomic imbalance in Restless Legs Syndrome

Jérôme Thireau , Charlotte Farah , Nicolas Molinari , Fabrice Bouilloux , Lucas Torreilles , et al.
Scientific Reports, 2017, 7, pp.46620. ⟨10.1038/srep46620⟩
Journal articles hal-01762549v1
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Explicit solutions for replicator-mutator equations: extinction vs. acceleration

Matthieu Alfaro , Rémi Carles
SIAM Journal on Applied Mathematics, 2014, 74 (6), pp.1919-1934. ⟨10.1137/140979411⟩
Journal articles hal-00989559v1
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Detecting past contraction in population size using haplotype homozygosity

C Merle , Jean-Michel Marin , F. Rousset , Raphaël Leblois
Mathematical and Computational Evolutionnary Biology 2016, Jun 2016, Montpellier, France.
Conference poster hal-02932275v1
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Joint inference of effective population size and genetic load from temporal population genomic data

Vitor A.C. Pavinato , Stéphane de Mita , Jean-Michel Marin , Miguel Navascués
Ancient Biomolecules of Plants, Animals, and Microbes 2021, Mar 2021, Virtual, United Kingdom. ⟨10.6084/m9.figshare.23943828⟩
Conference poster hal-03189306v1
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Resampling: an improvement of Importance Sampling in varying population size models

Coralie Merle , Raphaël Leblois , François Rousset , Pierre Pudlo
Theoretical Population Biology, 2017, 114, pp.70 - 87. ⟨10.1016/j.tpb.2016.09.002⟩
Journal articles hal-01270437v1
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Maximum-Likelihood Inference of Population Size Contractions from Microsatellite Data

Raphaël Leblois , Pierre Pudlo , Néron Joseph , François Bertaux , Champak Reddy Beeravolu , et al.
Molecular Biology and Evolution, 2014, 31 (10), pp.2805-2823. ⟨10.1093/molbev/msu212⟩
Journal articles hal-02087423v1

The effect of RAD allele dropout on the estimation of genetic variation within and between populations.

Mathieu Gautier , Karim Gharbi , Timothee Cezard , Julien Foucaud , Carole Kerdelhué , et al.
Molecular Ecology, 2013, 22 (11), pp.3165-78. ⟨10.1111/mec.12089⟩
Journal articles istex hal-00860611v1

The probability of fixation of a single mutant in an exchangeable selection model.

Sabin Lessard , Véronique Ladret
Journal of Mathematical Biology, 2007, Volume 54 (Issue 5), pp 721-744. ⟨10.1007/s00285-007-0069-7⟩
Journal articles istex hal-00805061v1
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Resampling : an improvement in varying population size models

Coralie Merle , Raphaël Leblois , Pierre Pudlo
Mathematical and Computational Evolutionnary Biology 2015, Jun 2015, Porquerolles, France. , 2015
Conference poster hal-02932290v1

New Statistical Methods For Association Studies And Genomic Prediction

Charles-Elie Rabier , Céline Delmas
4th International Conference on Statistics: Theory and Applications (ICSTA'22), Jul 2022, Prague, Czech Republic. ⟨10.11159/icsta22.135⟩
Conference papers hal-03769506v1

Fixation probability for a beneficial allele and a mutant strategy in a linear game under weak selection in a finite island model.

Véronique Ladret , Sabin Lessard
Theoretical Population Biology, 2007, 72 (3), pp 409-425. ⟨10.1016/j.tpb.2007.04.001⟩
Journal articles istex hal-00805064v1

Empirical likelihood for Bayesian inference in population genetics

Pierre Pudlo , Raphaël Leblois , Christian Robert
Mathematical and Computational Evolutionnary Biology 2012, Jun 2012, Montpellier, France
Conference papers hal-02932407v1

Estimation of demo-genetic model probabilities with Approximate Bayesian Computation using linear discriminant analysis on summary statistics.

Arnaud Estoup , Eric Lombaert , Jean-Michel Marin , Thomas Guillemaud , Pierre Pudlo , et al.
Molecular Ecology Resources, 2012, 12 (5), pp.846-55. ⟨10.1111/j.1755-0998.2012.03153.x⟩
Journal articles istex hal-00796906v1

Evolutionary game dynamics in a finite asymmetric two-deme population and emergence of cooperation.

Véronique Ladret , Sabin Lessard
Journal of Theoretical Biology, 2008, 255 (1), pp 137-151. ⟨10.1016/j.jtbi.2008.07.025⟩
Journal articles istex hal-00805065v1