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Structure: Internal structure identifier : 1042063
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On the robustness of the generalized fused lasso to prior specifications

Vivian Viallon , Sophie Lambert-Lacroix , Holger Höfling , Franck Picard
Statistics and Computing, 2016, 26 (1), pp.285-301. ⟨10.1007/s11222-014-9497-6⟩
Journal articles hal-01067903v2

A Polymer Physics View on Universal and Sequence-Specific Aspects of Chromosome Folding

Daniel Jost , Angelo Rosa , Cédric Vaillant , Ralf Everaers
Nuclear Architecture and Dynamics, Elsevier, pp.149-169, 2018
Book sections hal-01976610v1
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Rouse model with transient intramolecular contacts on a timescale of seconds recapitulates folding and fluctuation of yeast chromosomes

Marius Socol , Renjie Wang , Daniel Jost , Pascal Carrivain , Cédric Vaillant , et al.
Nucleic Acids Research, 2019, 47 (12), pp.6195-6207. ⟨10.1093/nar/gkz374⟩
Journal articles hal-02276944v1
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Double reading of outsourced CT/MR radiology reports

Jean-François Vendrell , Julien Frandon , Bastien Boussat , François Cotton , Gilbert R. Ferretti , et al.
Journal of Patient Safety, In press, ⟨10.1097/PTS.0000000000000525⟩
Journal articles hal-02063156v1
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Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes

Roland Akakpo , Nora Scarcelli , Hana Chaïr , Alexandre Dansi , Gustave Djedatin , et al.
BMC Genomics, 2017, 18 (1), ⟨10.1186/s12864-017-4143-2⟩
Journal articles hal-01814687v1
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MatrixDB: integration of new data with a focus on glycosaminoglycan interactions

Olivier Clerc , Madeline Deniaud , Sylvain Vallet , Alexandra Naba , Alain Rivet , et al.
Nucleic Acids Research, 2019, 47 (D1), pp.D376-D381. ⟨10.1093/nar/gky1035⟩
Journal articles hal-02109904v1
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High Dimensional Classification with combined Adaptive Sparse PLS and Logistic Regression

Ghislain Durif , Laurent Modolo , Jakob Michaelsson , Jeff E. Mold , Sophie Lambert-Lacroix , et al.
Bioinformatics, 2018, 34 (3), pp.485-493. ⟨10.1093/bioinformatics/btx571⟩
Journal articles hal-01587360v1

Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance

Daniel Jost , Cédric Vaillant
Nucleic Acids Research, 2018, 46 (5), pp.2252-2264
Journal articles hal-01976597v1

Multi-scale Modelling of Erythropoiesis and Hemoglobin Production

Anass Bouchnita , Alexandre Rocca , Eric Fanchon , Mark J. Koury , Jean-Marc Moulis , et al.
Journal of Inorganic and Organometallic Polymers and Materials, 2016, 26 (6), pp.1362 - 1379. ⟨10.1007/s10904-016-0437-0⟩
Journal articles hal-01929703v1

Coupling 1D modifications and 3D nuclear organization: data, models and function

Daniel Jost , Cédric Vaillant , Peter Meister
Current Opinion in Cell Biology, 2017, 44, pp.20-27
Journal articles hal-01976581v1
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Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis

Ghislain Durif , Laurent Modolo , Jeff E Mold , Sophie Lambert-Lacroix , Franck Picard
Bioinformatics, 2019, 35, 20, pp.4011-4019. ⟨10.1093/bioinformatics/btz177⟩
Journal articles hal-01649275v3
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Assigning function to natural allelic variation via dynamic modeling of gene network induction

Magali Richard , Florent Chuffart , Hélène Duplus‐bottin , Fanny Pouyet , Martin Spichty , et al.
Molecular Systems Biology, 2018, 14 (1), pp.e7803. ⟨10.15252/msb.20177803⟩
Journal articles hal-01976613v1

The folding landscape of the epigenome

Juan Olarte-Plata , Noelle Haddad , Cédric Vaillant , Daniel Jost
Physical Biology, 2016, 13 (2), pp.026001
Journal articles hal-01976579v1

Hospital survey on patient safety culture (HSOPS)

Joris Giai , Bastien Boussat , Pauline Occelli , Gérald Gandon , Arnaud Seigneurin , et al.
International Journal for Quality in Health Care, 2017, 29 (5), pp.685-692. ⟨10.1093/intqhc/mzx086⟩
Journal articles hal-01719514v1

Genomics of cellular proliferation in periodic environmental fluctuations

Jérôme Salignon , Magali Richard , Etienne Fulcrand , Hélène Duplus‐bottin , Gaël Yvert
Molecular Systems Biology, 2018, 14 (3), pp.e7823
Journal articles hal-02009632v1
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New insights into HCV replication in original cells from Aedes mosquitoes

Catherine Fallecker , Alban Caporossi , Yassine Rechoum , Frederic Garzoni , Sylvie Larrat , et al.
Virology Journal, 2016, 14 (1), pp.161. ⟨10.1186/s12985-017-0828-z⟩
Journal articles inserm-01577634v1
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Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis

Ghislain Durif , Laurent Modolo , Jeff E. Mold , Sophie Lambert-Lacroix , Franck Picard
RECOMB 2018 - 22nd Annual International Conference on Research in Computational Molecular Biology, Ecole Polytechnique, Apr 2018, Paris, France. pp.254-255
Conference papers hal-01962030v1

Chapter 11. Strategies for Building Protein–Glycosaminoglycan Interaction Networks Combining SPRi, SPR, and BLI

Sylvain Vallet , Lisette Deddens , Arnaud Vonarburg , Romain Salza , Clément Faye , et al.
Handbook of Surface Plasmon Resonance: Edition 2, 2, Royal Society of Chemistry, pp.398-414, 2017, 978-1-78262-730-2
Book sections hal-02272496v1
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SPINK2 deficiency causes infertility by inducing sperm defects in heterozygotes and azoospermia inhomozygotes

Zine-Eddine Kherraf , Marie Christou-Kent , Thomas Karaouzene , Amir Amiri-Yekta , Guillaume Martinez , et al.
EMBO Molecular Medicine, 2017, 9 (8), pp.1132-1149. ⟨10.15252/emmm.201607461⟩
Journal articles hal-01741725v1

Exploiting Single-Cell Quantitative Data to Map Genetic Variants Having Probabilistic Effects

Florent Chuffart , Magali Richard , Daniel Jost , Claire Burny , Hélène Duplus-Bottin , et al.
PLoS Genetics, 2016, 12 (8), pp.e1006213
Journal articles hal-01976590v1

Modeling the functional coupling between 3D chromatin organization and epigenome

Cédric Vaillant , Daniel Jost
Modeling the 3D conformation of genomes, 2019
Book sections hal-02386050v1

Minimax wavelet estimation for multisample heteroscedastic nonparametric regression

Madison Giacofci , Sophie Lambert-Lacroix , Franck Picard
Journal of Nonparametric Statistics, 2018, 30 (1), pp.238-261. ⟨10.1080/10485252.2017.1406091⟩
Journal articles hal-02270811v1

Modeling the Functional Coupling between 3D Chromatin Organization and Epigenome

Cédric Vaillant , Daniel Jost
Modeling the 3D conformation of genomes, 1, CRC Press, pp.21-56, 2019, 9781315144009
Book sections hal-02273692v1
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Global chromatin conformation differences in the Drosophila dosage compensated chromosome X

Koustav Pal , Mattia Forcato , Daniel Jost , Thomas Sexton , Cédric Vaillant , et al.
Nature Communications, 2019, 10 (1), ⟨10.1038/s41467-019-13350-8⟩
Journal articles hal-02386022v1

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions

M. Sivade , D. Alonso-López , M. Ammari , G. Bradley , N. Campbell , et al.
BMC Bioinformatics, 2018, 19 (1), ⟨10.1186/s12859-018-2118-1⟩
Journal articles hal-01877988v1

Perspectives: using polymer modeling to understand the formation and function of nuclear compartments

N. Haddad , D. Jost , C. Vaillant
Chromosome Research, 2017, 25 (1), pp.35-50
Journal articles hal-01976574v1

IC-Finder: inferring robustly the hierarchical organization of chromatin folding

Noelle Haddad , Cédric Vaillant , Daniel Jost
Nucleic Acids Research, 2017, 45 (10), pp.gkx036. ⟨10.1093/nar/gkx036⟩
Journal articles hal-01976542v1