On the robustness of the generalized fused lasso to prior specifications
Vivian Viallon
,
Sophie Lambert-Lacroix
,
Holger Höfling
,
Franck Picard
Journal articles
hal-01067903v2
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A Polymer Physics View on Universal and Sequence-Specific Aspects of Chromosome Folding
Daniel Jost
,
Angelo Rosa
,
Cédric Vaillant
,
Ralf Everaers
Nuclear Architecture and Dynamics , Elsevier, pp.149-169, 2018
Book sections
hal-01976610v1
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Rouse model with transient intramolecular contacts on a timescale of seconds recapitulates folding and fluctuation of yeast chromosomes
Marius Socol
,
Renjie Wang
,
Daniel Jost
,
Pascal Carrivain
,
Cédric Vaillant
,
et al.
Journal articles
hal-02276944v1
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Double reading of outsourced CT/MR radiology reports
Jean-François Vendrell
,
Julien Frandon
,
Bastien Boussat
,
François Cotton
,
Gilbert R. Ferretti
,
et al.
Journal articles
hal-02063156v1
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Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes
Roland Akakpo
,
Nora Scarcelli
,
Hana Chaïr
,
Alexandre Dansi
,
Gustave Djedatin
,
et al.
Journal articles
hal-01814687v1
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MatrixDB: integration of new data with a focus on glycosaminoglycan interactions
Olivier Clerc
,
Madeline Deniaud
,
Sylvain Vallet
,
Alexandra Naba
,
Alain Rivet
,
et al.
Journal articles
hal-02109904v1
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High Dimensional Classification with combined Adaptive Sparse PLS and Logistic Regression
Ghislain Durif
,
Laurent Modolo
,
Jakob Michaelsson
,
Jeff E. Mold
,
Sophie Lambert-Lacroix
,
et al.
Journal articles
hal-01587360v1
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Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance
Daniel Jost
,
Cédric Vaillant
Nucleic Acids Research , 2018, 46 (5), pp.2252-2264
Journal articles
hal-01976597v1
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Multi-scale Modelling of Erythropoiesis and Hemoglobin Production
Anass Bouchnita
,
Alexandre Rocca
,
Eric Fanchon
,
Mark J. Koury
,
Jean-Marc Moulis
,
et al.
Journal articles
hal-01929703v1
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Coupling 1D modifications and 3D nuclear organization: data, models and function
Daniel Jost
,
Cédric Vaillant
,
Peter Meister
Current Opinion in Cell Biology , 2017, 44, pp.20-27
Journal articles
hal-01976581v1
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Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis
Ghislain Durif
,
Laurent Modolo
,
Jeff E Mold
,
Sophie Lambert-Lacroix
,
Franck Picard
Journal articles
hal-01649275v3
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Assigning function to natural allelic variation via dynamic modeling of gene network induction
Magali Richard
,
Florent Chuffart
,
Hélène Duplus‐bottin
,
Fanny Pouyet
,
Martin Spichty
,
et al.
Journal articles
hal-01976613v1
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The folding landscape of the epigenome
Juan Olarte-Plata
,
Noelle Haddad
,
Cédric Vaillant
,
Daniel Jost
Physical Biology , 2016, 13 (2), pp.026001
Journal articles
hal-01976579v1
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Hospital survey on patient safety culture (HSOPS)
Joris Giai
,
Bastien Boussat
,
Pauline Occelli
,
Gérald Gandon
,
Arnaud Seigneurin
,
et al.
Journal articles
hal-01719514v1
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Genomics of cellular proliferation in periodic environmental fluctuations
Jérôme Salignon
,
Magali Richard
,
Etienne Fulcrand
,
Hélène Duplus‐bottin
,
Gaël Yvert
Molecular Systems Biology , 2018, 14 (3), pp.e7823
Journal articles
hal-02009632v1
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New insights into HCV replication in original cells from Aedes mosquitoes
Catherine Fallecker
,
Alban Caporossi
,
Yassine Rechoum
,
Frederic Garzoni
,
Sylvie Larrat
,
et al.
Journal articles
inserm-01577634v1
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Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis
Ghislain Durif
,
Laurent Modolo
,
Jeff E. Mold
,
Sophie Lambert-Lacroix
,
Franck Picard
RECOMB 2018 - 22nd Annual International Conference on Research in Computational Molecular Biology , Ecole Polytechnique, Apr 2018, Paris, France. pp.254-255
Conference papers
hal-01962030v1
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Chapter 11. Strategies for Building Protein–Glycosaminoglycan Interaction Networks Combining SPRi, SPR, and BLI
Sylvain Vallet
,
Lisette Deddens
,
Arnaud Vonarburg
,
Romain Salza
,
Clément Faye
,
et al.
Handbook of Surface Plasmon Resonance: Edition 2 , 2, Royal Society of Chemistry, pp.398-414, 2017, 978-1-78262-730-2
Book sections
hal-02272496v1
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SPINK2 deficiency causes infertility by inducing sperm defects in heterozygotes and azoospermia inhomozygotes
Zine-Eddine Kherraf
,
Marie Christou-Kent
,
Thomas Karaouzene
,
Amir Amiri-Yekta
,
Guillaume Martinez
,
et al.
Journal articles
hal-01741725v1
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Exploiting Single-Cell Quantitative Data to Map Genetic Variants Having Probabilistic Effects
Florent Chuffart
,
Magali Richard
,
Daniel Jost
,
Claire Burny
,
Hélène Duplus-Bottin
,
et al.
PLoS Genetics , 2016, 12 (8), pp.e1006213
Journal articles
hal-01976590v1
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Modeling the functional coupling between 3D chromatin organization and epigenome
Cédric Vaillant
,
Daniel Jost
Modeling the 3D conformation of genomes , 2019
Book sections
hal-02386050v1
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Minimax wavelet estimation for multisample heteroscedastic nonparametric regression
Madison Giacofci
,
Sophie Lambert-Lacroix
,
Franck Picard
Journal articles
hal-02270811v1
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Modeling the Functional Coupling between 3D Chromatin Organization and Epigenome
Cédric Vaillant
,
Daniel Jost
Modeling the 3D conformation of genomes , 1, CRC Press, pp.21-56, 2019, 9781315144009
Book sections
hal-02273692v1
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Global chromatin conformation differences in the Drosophila dosage compensated chromosome X
Koustav Pal
,
Mattia Forcato
,
Daniel Jost
,
Thomas Sexton
,
Cédric Vaillant
,
et al.
Journal articles
hal-02386022v1
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Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions
M. Sivade
,
D. Alonso-López
,
M. Ammari
,
G. Bradley
,
N. Campbell
,
et al.
Journal articles
hal-01877988v1
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Perspectives: using polymer modeling to understand the formation and function of nuclear compartments
N. Haddad
,
D. Jost
,
C. Vaillant
Chromosome Research , 2017, 25 (1), pp.35-50
Journal articles
hal-01976574v1
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IC-Finder: inferring robustly the hierarchical organization of chromatin folding
Noelle Haddad
,
Cédric Vaillant
,
Daniel Jost
Journal articles
hal-01976542v1
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